A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)

Stephen A. Goff; Darrell Ricke; Tien Hung Lan; Gernot Presting; Ronglin Wang; Molly Dunn; Jane Glazebrook; Allen Sessions; Paul Oeller; Hemant Varma; David Hadley; Don Hutchison; Chris Martin; Fumiaki Katagiri; B. Markus Lange; Todd Moughamer; Yu Xia; Paul Budworth; Jingping Zhong; Trini Miguel; Uta Paszkowski; Shiping Zhang; Michelle Colbert; Wei Lin Sun; Lili Chen; Bret Cooper; Sylvia Park; Todd Charles Wood; Long Mao; Peter Quail; Rod Wing; Ralph Deans; Yeisoo Yu; Andrey Zharkikh; Richard Shen; Sudhir Sahasrabudhe; Alun Thomas; Rob Cannings; Alexander Gutin; Dmitry Pruss; Julia Reid; Sean Tavtigian; Jeff Mitchell; Glenn Eldredge; Terri Scholl; Rose Mary Miller; Satish Bhatnagar; Nils Adey; Todd Rubano; Nadeem Tusneem; Rosann Robinson; Jane Feldhaus; Teresita Macalma; Arnold Oliphant; Steven Briggs

doi:10.1126/science.1068275

A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)

Stephen A. Goff, Darrell Ricke, Tien Hung Lan, Gernot Presting, Ronglin Wang, Molly Dunn, Jane Glazebrook, Allen Sessions, Paul Oeller, Hemant Varma, David Hadley, Don Hutchison, Chris Martin, Fumiaki Katagiri, B. Markus Lange, Todd Moughamer, Yu Xia, Paul Budworth, Jingping Zhong, Trini MiguelUta Paszkowski, Shiping Zhang, Michelle Colbert, Wei Lin Sun, Lili Chen, Bret Cooper, Sylvia Park, Todd Charles Wood, Long Mao, Peter Quail, Rod Wing, Ralph Deans, Yeisoo Yu, Andrey Zharkikh, Richard Shen, Sudhir Sahasrabudhe, Alun Thomas, Rob Cannings, Alexander Gutin, Dmitry Pruss, Julia Reid, Sean Tavtigian, Jeff Mitchell, Glenn Eldredge, Terri Scholl, Rose Mary Miller, Satish Bhatnagar, Nils Adey, Todd Rubano, Nadeem Tusneem, Rosann Robinson, Jane Feldhaus, Teresita Macalma, Arnold Oliphant, Steven Briggs

Research output: Contribution to journal › Article › peer-review

2789 Scopus citations

Abstract

The genome of the japonica subspecies of rice, an important cereal and model monocot, was sequenced and assembled by whole-genome shotgun sequencing. The assembled sequence covers 93% of the 420-megabase genome. Gene predictions on the assembled sequence suggest that the genome contains 32,000 to 50,000 genes. Homologs of 98% of the known maize, wheat, and barley proteins are found in rice. Synteny and gene homology between rice and the other cereal genomes are extensive, whereas synteny with Arabidopsis is limited. Assignment of candidate rice orthologs to Arabidopsis genes is possible in many cases. The rice genome sequence provides a foundation for the improvement of cereals, our most important crops.

Original language	English (US)
Journal	Science
Volume	296
Issue number	5565
DOIs	https://doi.org/10.1126/science.1068275
State	Published - Apr 5 2002
Externally published	Yes

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Goff, S. A., Ricke, D., Lan, T. H., Presting, G., Wang, R., Dunn, M., Glazebrook, J., Sessions, A., Oeller, P., Varma, H., Hadley, D., Hutchison, D., Martin, C., Katagiri, F., Lange, B. M., Moughamer, T., Xia, Y., Budworth, P., Zhong, J., ... Briggs, S. (2002). A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science, 296(5565). https://doi.org/10.1126/science.1068275

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title = "A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)",

abstract = "The genome of the japonica subspecies of rice, an important cereal and model monocot, was sequenced and assembled by whole-genome shotgun sequencing. The assembled sequence covers 93% of the 420-megabase genome. Gene predictions on the assembled sequence suggest that the genome contains 32,000 to 50,000 genes. Homologs of 98% of the known maize, wheat, and barley proteins are found in rice. Synteny and gene homology between rice and the other cereal genomes are extensive, whereas synteny with Arabidopsis is limited. Assignment of candidate rice orthologs to Arabidopsis genes is possible in many cases. The rice genome sequence provides a foundation for the improvement of cereals, our most important crops.",

author = "Goff, {Stephen A.} and Darrell Ricke and Lan, {Tien Hung} and Gernot Presting and Ronglin Wang and Molly Dunn and Jane Glazebrook and Allen Sessions and Paul Oeller and Hemant Varma and David Hadley and Don Hutchison and Chris Martin and Fumiaki Katagiri and Lange, {B. Markus} and Todd Moughamer and Yu Xia and Paul Budworth and Jingping Zhong and Trini Miguel and Uta Paszkowski and Shiping Zhang and Michelle Colbert and Sun, {Wei Lin} and Lili Chen and Bret Cooper and Sylvia Park and Wood, {Todd Charles} and Long Mao and Peter Quail and Rod Wing and Ralph Deans and Yeisoo Yu and Andrey Zharkikh and Richard Shen and Sudhir Sahasrabudhe and Alun Thomas and Rob Cannings and Alexander Gutin and Dmitry Pruss and Julia Reid and Sean Tavtigian and Jeff Mitchell and Glenn Eldredge and Terri Scholl and Miller, {Rose Mary} and Satish Bhatnagar and Nils Adey and Todd Rubano and Nadeem Tusneem and Rosann Robinson and Jane Feldhaus and Teresita Macalma and Arnold Oliphant and Steven Briggs",

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day = "5",

doi = "10.1126/science.1068275",

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Goff, SA, Ricke, D, Lan, TH, Presting, G, Wang, R, Dunn, M, Glazebrook, J, Sessions, A, Oeller, P, Varma, H, Hadley, D, Hutchison, D, Martin, C, Katagiri, F, Lange, BM, Moughamer, T, Xia, Y, Budworth, P, Zhong, J, Miguel, T, Paszkowski, U, Zhang, S, Colbert, M, Sun, WL, Chen, L, Cooper, B, Park, S, Wood, TC, Mao, L, Quail, P, Wing, R, Deans, R, Yu, Y, Zharkikh, A, Shen, R, Sahasrabudhe, S, Thomas, A, Cannings, R, Gutin, A, Pruss, D, Reid, J, Tavtigian, S, Mitchell, J, Eldredge, G, Scholl, T, Miller, RM, Bhatnagar, S, Adey, N, Rubano, T, Tusneem, N, Robinson, R, Feldhaus, J, Macalma, T, Oliphant, A & Briggs, S 2002, 'A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)', Science, vol. 296, no. 5565. https://doi.org/10.1126/science.1068275

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T1 - A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)

AU - Goff, Stephen A.

AU - Ricke, Darrell

AU - Lan, Tien Hung

AU - Presting, Gernot

AU - Wang, Ronglin

AU - Dunn, Molly

AU - Glazebrook, Jane

AU - Sessions, Allen

AU - Oeller, Paul

AU - Varma, Hemant

AU - Hadley, David

AU - Hutchison, Don

AU - Martin, Chris

AU - Katagiri, Fumiaki

AU - Lange, B. Markus

AU - Moughamer, Todd

AU - Xia, Yu

AU - Budworth, Paul

AU - Zhong, Jingping

AU - Miguel, Trini

AU - Paszkowski, Uta

AU - Zhang, Shiping

AU - Colbert, Michelle

AU - Sun, Wei Lin

AU - Chen, Lili

AU - Cooper, Bret

AU - Park, Sylvia

AU - Wood, Todd Charles

AU - Mao, Long

AU - Quail, Peter

AU - Wing, Rod

AU - Deans, Ralph

AU - Yu, Yeisoo

AU - Zharkikh, Andrey

AU - Shen, Richard

AU - Sahasrabudhe, Sudhir

AU - Thomas, Alun

AU - Cannings, Rob

AU - Gutin, Alexander

AU - Pruss, Dmitry

AU - Reid, Julia

AU - Tavtigian, Sean

AU - Mitchell, Jeff

AU - Eldredge, Glenn

AU - Scholl, Terri

AU - Miller, Rose Mary

AU - Bhatnagar, Satish

AU - Adey, Nils

AU - Rubano, Todd

AU - Tusneem, Nadeem

AU - Robinson, Rosann

AU - Feldhaus, Jane

AU - Macalma, Teresita

AU - Oliphant, Arnold

AU - Briggs, Steven

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PY - 2002/4/5

Y1 - 2002/4/5

N2 - The genome of the japonica subspecies of rice, an important cereal and model monocot, was sequenced and assembled by whole-genome shotgun sequencing. The assembled sequence covers 93% of the 420-megabase genome. Gene predictions on the assembled sequence suggest that the genome contains 32,000 to 50,000 genes. Homologs of 98% of the known maize, wheat, and barley proteins are found in rice. Synteny and gene homology between rice and the other cereal genomes are extensive, whereas synteny with Arabidopsis is limited. Assignment of candidate rice orthologs to Arabidopsis genes is possible in many cases. The rice genome sequence provides a foundation for the improvement of cereals, our most important crops.

AB - The genome of the japonica subspecies of rice, an important cereal and model monocot, was sequenced and assembled by whole-genome shotgun sequencing. The assembled sequence covers 93% of the 420-megabase genome. Gene predictions on the assembled sequence suggest that the genome contains 32,000 to 50,000 genes. Homologs of 98% of the known maize, wheat, and barley proteins are found in rice. Synteny and gene homology between rice and the other cereal genomes are extensive, whereas synteny with Arabidopsis is limited. Assignment of candidate rice orthologs to Arabidopsis genes is possible in many cases. The rice genome sequence provides a foundation for the improvement of cereals, our most important crops.

UR - http://www.sciencemag.org/cgi/doi/10.1126/science.1068275

UR - http://www.scopus.com/inward/record.url?scp=0037023349&partnerID=8YFLogxK

U2 - 10.1126/science.1068275

DO - 10.1126/science.1068275

M3 - Article

SN - 0036-8075

VL - 296

JO - Science

JF - Science

IS - 5565

ER -

A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)

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