TY - JOUR
T1 - Abundance and diversity of resistomes differ between healthy human oral cavities and gut
AU - Carr, Victoria R.
AU - Witherden, Elizabeth A.
AU - Lee, Sunjae
AU - Shoaie, Saeed
AU - Mullany, Peter
AU - Proctor, Gordon B.
AU - Gomez-Cabrero, David
AU - Moyes, David L.
N1 - Generated from Scopus record by KAUST IRTS on 2021-02-16
PY - 2020/12/1
Y1 - 2020/12/1
N2 - The global threat of antimicrobial resistance has driven the use of high-throughput sequencing techniques to monitor the profile of resistance genes, known as the resistome, in microbial populations. The human oral cavity contains a poorly explored reservoir of these genes. Here we analyse and compare the resistome profiles of 788 oral cavities worldwide with paired stool metagenomes. We find country and body site-specific differences in the prevalence of antimicrobial resistance genes, classes and mechanisms in oral and stool samples. Within individuals, the highest abundances of antimicrobial resistance genes are found in the oral cavity, but the oral cavity contains a lower diversity of resistance genes compared to the gut. Additionally, co-occurrence analysis shows contrasting ARG-species associations between saliva and stool samples. Maintenance and persistence of antimicrobial resistance is likely to vary across different body sites. Thus, we highlight the importance of characterising the resistome across body sites to uncover the antimicrobial resistance potential in the human body.
AB - The global threat of antimicrobial resistance has driven the use of high-throughput sequencing techniques to monitor the profile of resistance genes, known as the resistome, in microbial populations. The human oral cavity contains a poorly explored reservoir of these genes. Here we analyse and compare the resistome profiles of 788 oral cavities worldwide with paired stool metagenomes. We find country and body site-specific differences in the prevalence of antimicrobial resistance genes, classes and mechanisms in oral and stool samples. Within individuals, the highest abundances of antimicrobial resistance genes are found in the oral cavity, but the oral cavity contains a lower diversity of resistance genes compared to the gut. Additionally, co-occurrence analysis shows contrasting ARG-species associations between saliva and stool samples. Maintenance and persistence of antimicrobial resistance is likely to vary across different body sites. Thus, we highlight the importance of characterising the resistome across body sites to uncover the antimicrobial resistance potential in the human body.
UR - http://www.nature.com/articles/s41467-020-14422-w
UR - http://www.scopus.com/inward/record.url?scp=85078913225&partnerID=8YFLogxK
U2 - 10.1038/s41467-020-14422-w
DO - 10.1038/s41467-020-14422-w
M3 - Article
C2 - 32019923
SN - 2041-1723
VL - 11
JO - Nature Communications
JF - Nature Communications
IS - 1
ER -