TY - JOUR
T1 - Brain waves analysis via a non-parametric Bayesian mixture of autoregressive kernels
AU - Granados-Garcia, Guilllermo
AU - Fiecas, Mark
AU - Babak, Shahbaba
AU - Fortin, Norbert J.
AU - Ombao, Hernando
N1 - KAUST Repository Item: Exported on 2022-01-19
Acknowledged KAUST grant number(s): NIH 1R01EB028753-01
Acknowledgements: The authors thank Dr. Hart (see Hart et al. 2020) for generously sharing his computer codes. Financial support is acknowledged from the KAUST Research Fund and the NIH 1R01EB028753-01 to B. Shahbaba and N. Fortin.
PY - 2021/12
Y1 - 2021/12
N2 - The standard approach to analyzing brain electrical activity is to examine the spectral density function (SDF) and identify frequency bands, defined a priori, that have the most substantial relative contributions to the overall variance of the signal. However, a limitation of this approach is that the precise frequency and bandwidth of oscillations are not uniform across different cognitive demands. Thus, these bands should not be arbitrarily set in any analysis. To overcome this limitation, the Bayesian mixture auto-regressive decomposition (BMARD) method is proposed, as a data-driven approach that identifies (i) the number of prominent spectral peaks, (ii) the frequency peak locations, and (iii) their corresponding bandwidths (or spread of power around the peaks). Using the BMARD method, the standardized SDF is represented as a Dirichlet process mixture based on a kernel derived from second-order auto-regressive processes which completely characterize the location (peak) and scale (bandwidth) parameters. A Metropolis-Hastings within the Gibbs algorithm is developed for sampling the posterior distribution of the mixture parameters. Simulations demonstrate the robust performance of the proposed method. Finally, the BMARD method is applied to analyze local field potential (LFP) activity from the hippocampus of laboratory rats across different conditions in a non-spatial sequence memory experiment, to identify the most prominent frequency bands and examine the link between specific patterns of brain oscillatory activity and trial-specific cognitive demands.
AB - The standard approach to analyzing brain electrical activity is to examine the spectral density function (SDF) and identify frequency bands, defined a priori, that have the most substantial relative contributions to the overall variance of the signal. However, a limitation of this approach is that the precise frequency and bandwidth of oscillations are not uniform across different cognitive demands. Thus, these bands should not be arbitrarily set in any analysis. To overcome this limitation, the Bayesian mixture auto-regressive decomposition (BMARD) method is proposed, as a data-driven approach that identifies (i) the number of prominent spectral peaks, (ii) the frequency peak locations, and (iii) their corresponding bandwidths (or spread of power around the peaks). Using the BMARD method, the standardized SDF is represented as a Dirichlet process mixture based on a kernel derived from second-order auto-regressive processes which completely characterize the location (peak) and scale (bandwidth) parameters. A Metropolis-Hastings within the Gibbs algorithm is developed for sampling the posterior distribution of the mixture parameters. Simulations demonstrate the robust performance of the proposed method. Finally, the BMARD method is applied to analyze local field potential (LFP) activity from the hippocampus of laboratory rats across different conditions in a non-spatial sequence memory experiment, to identify the most prominent frequency bands and examine the link between specific patterns of brain oscillatory activity and trial-specific cognitive demands.
UR - http://hdl.handle.net/10754/668448
UR - https://linkinghub.elsevier.com/retrieve/pii/S0167947321002437
UR - http://www.scopus.com/inward/record.url?scp=85122431489&partnerID=8YFLogxK
U2 - 10.1016/j.csda.2021.107409
DO - 10.1016/j.csda.2021.107409
M3 - Article
C2 - 35781923
SN - 0167-9473
SP - 107409
JO - Computational Statistics and Data Analysis
JF - Computational Statistics and Data Analysis
ER -