Codon usage tabulated from the international DNA sequence databases

Yasukazu Nakamura; Takashi Gojobori; Toshimichi Ikemura

doi:10.1093/nar/25.1.244

Codon usage tabulated from the international DNA sequence databases

Yasukazu Nakamura^*, Takashi Gojobori, Toshimichi Ikemura

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

76 Scopus citations

Abstract

The codon usage in individual protein genes has been calculated using the nucleotide sequence obtained from the GenBank Genetic Sequence Database. Sum of the codon use of each organism has been also calculated. The data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of codon usage of genes in organisms was made searchable by name of organism through a web site. The compilation has been synchronized with a major release of GenBank.

Original language	English (US)
Pages (from-to)	244-245
Number of pages	2
Journal	NUCLEIC ACIDS RESEARCH
Volume	25
Issue number	1
DOIs	https://doi.org/10.1093/nar/25.1.244
State	Published - Jan 1 1997
Externally published	Yes

ASJC Scopus subject areas

Genetics

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abstract = "The codon usage in individual protein genes has been calculated using the nucleotide sequence obtained from the GenBank Genetic Sequence Database. Sum of the codon use of each organism has been also calculated. The data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of codon usage of genes in organisms was made searchable by name of organism through a web site. The compilation has been synchronized with a major release of GenBank.",

author = "Yasukazu Nakamura and Takashi Gojobori and Toshimichi Ikemura",

note = "Funding Information: We wish to thank Dr Y. Ugawa at the DNA Information and Stock Center, National Institute of Agrobiological Resources for help in constructing and distributing the database. This work was supported in part by a grant-in-aid for databases from the Ministry of Education, Science, Sports and Culture of Japan. Y.N. is supported by the Kazusa DNA Research Institute Foundation.",

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AU - Gojobori, Takashi

AU - Ikemura, Toshimichi

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PY - 1997/1/1

Y1 - 1997/1/1

N2 - The codon usage in individual protein genes has been calculated using the nucleotide sequence obtained from the GenBank Genetic Sequence Database. Sum of the codon use of each organism has been also calculated. The data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of codon usage of genes in organisms was made searchable by name of organism through a web site. The compilation has been synchronized with a major release of GenBank.

AB - The codon usage in individual protein genes has been calculated using the nucleotide sequence obtained from the GenBank Genetic Sequence Database. Sum of the codon use of each organism has been also calculated. The data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of codon usage of genes in organisms was made searchable by name of organism through a web site. The compilation has been synchronized with a major release of GenBank.

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Codon usage tabulated from the international DNA sequence databases

Abstract

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