Codon usage tabulated from the international DNA sequence databases

Y. Nakamura; T. Gojobori; T. Ikemura

doi:10.1093/nar/26.1.334

Codon usage tabulated from the international DNA sequence databases

Y. Nakamura^*, T. Gojobori, T. Ikemura

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

72 Scopus citations

Abstract

CUTG (codon usage tabulated from GenBank) is a comprehensive database for codon usage. The codon usage for each full-length protein gene has been calculated using the nucleotide sequence obtained from GenBank sequence database. The sum of the codon use of each organism has been also calculated. The data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of codon usage of genes in organisms was made searchable by name of organism through a web site http://www.dna.affrc.go.jp/ ~ nakamura/CUTG.html The compilation is synchronized with major release of GenBank.

Original language	English (US)
Pages (from-to)	334
Number of pages	1
Journal	NUCLEIC ACIDS RESEARCH
Volume	26
Issue number	1
DOIs	https://doi.org/10.1093/nar/26.1.334
State	Published - Jan 1 1998
Externally published	Yes

ASJC Scopus subject areas

Genetics

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10.1093/nar/26.1.334

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title = "Codon usage tabulated from the international DNA sequence databases",

abstract = "CUTG (codon usage tabulated from GenBank) is a comprehensive database for codon usage. The codon usage for each full-length protein gene has been calculated using the nucleotide sequence obtained from GenBank sequence database. The sum of the codon use of each organism has been also calculated. The data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of codon usage of genes in organisms was made searchable by name of organism through a web site http://www.dna.affrc.go.jp/ ~ nakamura/CUTG.html The compilation is synchronized with major release of GenBank.",

author = "Y. Nakamura and T. Gojobori and T. Ikemura",

note = "Funding Information: We wish to thank Dr Y.Ugawa at the DNA Information and Stock Center, National Institute of Agrobiological Resources for help in constructing and distributing the database. This work was supported in part by a grant-in-aid for databases from the Ministry of Education, Science, Sports and Culture of Japan. Y.N. is supported by the Kazusa DNA Research Institute Foundation.",

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AU - Ikemura, T.

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Y1 - 1998/1/1

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AB - CUTG (codon usage tabulated from GenBank) is a comprehensive database for codon usage. The codon usage for each full-length protein gene has been calculated using the nucleotide sequence obtained from GenBank sequence database. The sum of the codon use of each organism has been also calculated. The data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of codon usage of genes in organisms was made searchable by name of organism through a web site http://www.dna.affrc.go.jp/ ~ nakamura/CUTG.html The compilation is synchronized with major release of GenBank.

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Codon usage tabulated from the international DNA sequence databases

Abstract

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