DDBJ working on evaluation and classification of bacterial genes in INSDC

Hideaki Sugawara; Takashi Abe; Takashi Gojobori; Yoshio Tateno

doi:10.1093/nar/gkl908

DDBJ working on evaluation and classification of bacterial genes in INSDC

Hideaki Sugawara, Takashi Abe, Takashi Gojobori, Yoshio Tateno^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

16 Scopus citations

Abstract

DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) newly collected and released 12 927 184 entries or 13 787 688 598 bases in the period from July 2005 to June 2006. The released data contain honeybee expressed sequence tags (ESTs), re-examined and re-annotated complete genome data of Escherichia coli K-12 W3110, medaka WGS and human MGA. We also systematically evaluated and classified the genes in the complete bacterial genomes submitted to the International Nucleotide Sequence Database Collaboration (INSDC, http://insdc.org) that is composed of DDBJ, EMBL Bank and GenBank. The examination and classification selected 557 000 genes as reliable ones among all the bacterial genes predicted by us.

Original language	English (US)
Pages (from-to)	D13-D15
Journal	NUCLEIC ACIDS RESEARCH
Volume	35
Issue number	SUPPL. 1
DOIs	https://doi.org/10.1093/nar/gkl908
State	Published - Jan 2007
Externally published	Yes

ASJC Scopus subject areas

Genetics

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@article{19c216d7004a48208c025127b732cd42,

title = "DDBJ working on evaluation and classification of bacterial genes in INSDC",

abstract = "DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) newly collected and released 12 927 184 entries or 13 787 688 598 bases in the period from July 2005 to June 2006. The released data contain honeybee expressed sequence tags (ESTs), re-examined and re-annotated complete genome data of Escherichia coli K-12 W3110, medaka WGS and human MGA. We also systematically evaluated and classified the genes in the complete bacterial genomes submitted to the International Nucleotide Sequence Database Collaboration (INSDC, http://insdc.org) that is composed of DDBJ, EMBL Bank and GenBank. The examination and classification selected 557 000 genes as reliable ones among all the bacterial genes predicted by us.",

author = "Hideaki Sugawara and Takashi Abe and Takashi Gojobori and Yoshio Tateno",

note = "Funding Information: We thank all staff of DDBJ for the data collection, annotation, release, software development, and gene evaluation and classification. DDBJ is funded by the Ministry of Education, Culture, Sports, Science and Technology (MEXT) with the management expenses grant for national university cooperation. Funding to pay the open access publication charges for this article was provided by the Japan Society for the Promotion of Science and Grant no. 16255006.",

year = "2007",

month = jan,

doi = "10.1093/nar/gkl908",

language = "English (US)",

volume = "35",

pages = "D13--D15",

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AU - Sugawara, Hideaki

AU - Abe, Takashi

AU - Gojobori, Takashi

AU - Tateno, Yoshio

N1 - Funding Information: We thank all staff of DDBJ for the data collection, annotation, release, software development, and gene evaluation and classification. DDBJ is funded by the Ministry of Education, Culture, Sports, Science and Technology (MEXT) with the management expenses grant for national university cooperation. Funding to pay the open access publication charges for this article was provided by the Japan Society for the Promotion of Science and Grant no. 16255006.

PY - 2007/1

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N2 - DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) newly collected and released 12 927 184 entries or 13 787 688 598 bases in the period from July 2005 to June 2006. The released data contain honeybee expressed sequence tags (ESTs), re-examined and re-annotated complete genome data of Escherichia coli K-12 W3110, medaka WGS and human MGA. We also systematically evaluated and classified the genes in the complete bacterial genomes submitted to the International Nucleotide Sequence Database Collaboration (INSDC, http://insdc.org) that is composed of DDBJ, EMBL Bank and GenBank. The examination and classification selected 557 000 genes as reliable ones among all the bacterial genes predicted by us.

AB - DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) newly collected and released 12 927 184 entries or 13 787 688 598 bases in the period from July 2005 to June 2006. The released data contain honeybee expressed sequence tags (ESTs), re-examined and re-annotated complete genome data of Escherichia coli K-12 W3110, medaka WGS and human MGA. We also systematically evaluated and classified the genes in the complete bacterial genomes submitted to the International Nucleotide Sequence Database Collaboration (INSDC, http://insdc.org) that is composed of DDBJ, EMBL Bank and GenBank. The examination and classification selected 557 000 genes as reliable ones among all the bacterial genes predicted by us.

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ER -

DDBJ working on evaluation and classification of bacterial genes in INSDC

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