DNA Data Bank of Japan (DDBJ) in XML

S. Miyazaki; H. Sugawara; T. Gojobori; Y. Tateno

doi:10.1093/nar/gkg088

DNA Data Bank of Japan (DDBJ) in XML

S. Miyazaki, H. Sugawara, T. Gojobori, Y. Tateno^*

^*Corresponding author for this work

Research output: Contribution to journal › Review article › peer-review

73 Scopus citations

Abstract

The DNA Data Bank of Japan (DDBJ, http://www.ddbj.nig.ac.jp) has collected and released more entries and bases than last year. This is mainly due to large-scale submissions from Japanese sequencing teams on mouse, rice, chimpanzee, nematoda and other organisms. The contributions of DDBJ over the past year are 17.3% (entries) and 10.3% (bases) of the combined outputs of the International Nucleotide Sequence Databases (INSD). Our complete genome sequence database, Genome Information Broker (GIB), has been improved by incorporating XML. It is now possible to perform a more sophisticated database search against the new GIB than the ordinary BLAST or FASTA search.

Original language	English (US)
Pages (from-to)	13-16
Number of pages	4
Journal	NUCLEIC ACIDS RESEARCH
Volume	31
Issue number	1
DOIs	https://doi.org/10.1093/nar/gkg088
State	Published - Jan 1 2003
Externally published	Yes

ASJC Scopus subject areas

Genetics

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10.1093/nar/gkg088

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title = "DNA Data Bank of Japan (DDBJ) in XML",

abstract = "The DNA Data Bank of Japan (DDBJ, http://www.ddbj.nig.ac.jp) has collected and released more entries and bases than last year. This is mainly due to large-scale submissions from Japanese sequencing teams on mouse, rice, chimpanzee, nematoda and other organisms. The contributions of DDBJ over the past year are 17.3% (entries) and 10.3% (bases) of the combined outputs of the International Nucleotide Sequence Databases (INSD). Our complete genome sequence database, Genome Information Broker (GIB), has been improved by incorporating XML. It is now possible to perform a more sophisticated database search against the new GIB than the ordinary BLAST or FASTA search.",

author = "S. Miyazaki and H. Sugawara and T. Gojobori and Y. Tateno",

note = "Funding Information: We thank the DDBJ members for making it possible to run DDBJ well in collaboration with EMBL Bank and GenBank. We are especially grateful to the Ministry of Education, Science, Culture, Sports and Technology for their enduring financial support. We also thank Ronald Taylor of the Center of Computational Biology, University of Colorado, for valuable comments.",

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AU - Tateno, Y.

N1 - Funding Information: We thank the DDBJ members for making it possible to run DDBJ well in collaboration with EMBL Bank and GenBank. We are especially grateful to the Ministry of Education, Science, Culture, Sports and Technology for their enduring financial support. We also thank Ronald Taylor of the Center of Computational Biology, University of Colorado, for valuable comments.

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DNA Data Bank of Japan (DDBJ) in XML

Abstract

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