TY - JOUR
T1 - Fast evaluation of protein dynamics from deficient 15N relaxation data
AU - Jaremko, Lukasz
AU - Jaremko, Mariusz
AU - Ejchart, Andrzej
AU - Nowakowski, Michał
N1 - KAUST Repository Item: Exported on 2020-10-01
Acknowledgements: The research by LJ and MJ reported in this publication was supported by funding from King Abdullah University of Science and Technology (KAUST).
PY - 2018/3/28
Y1 - 2018/3/28
N2 - Simple and convenient method of protein dynamics evaluation from the insufficient experimental N relaxation data is presented basing on the ratios, products, and differences of longitudinal and transverse N relaxation rates obtained at a single magnetic field. Firstly, the proposed approach allows evaluating overall tumbling correlation time (nanosecond time scale). Next, local parameters of the model-free approach characterizing local mobility of backbone amide N–H vectors on two different time scales, S and R, can be elucidated. The generalized order parameter, S, describes motions on the time scale faster than the overall tumbling correlation time (pico- to nanoseconds), while the chemical exchange term, R, identifies processes slower than the overall tumbling correlation time (micro- to milliseconds). Advantages and disadvantages of different methods of data handling are thoroughly discussed.
AB - Simple and convenient method of protein dynamics evaluation from the insufficient experimental N relaxation data is presented basing on the ratios, products, and differences of longitudinal and transverse N relaxation rates obtained at a single magnetic field. Firstly, the proposed approach allows evaluating overall tumbling correlation time (nanosecond time scale). Next, local parameters of the model-free approach characterizing local mobility of backbone amide N–H vectors on two different time scales, S and R, can be elucidated. The generalized order parameter, S, describes motions on the time scale faster than the overall tumbling correlation time (pico- to nanoseconds), while the chemical exchange term, R, identifies processes slower than the overall tumbling correlation time (micro- to milliseconds). Advantages and disadvantages of different methods of data handling are thoroughly discussed.
UR - http://hdl.handle.net/10754/627505
UR - http://link.springer.com/article/10.1007/s10858-018-0176-3
UR - http://www.scopus.com/inward/record.url?scp=85044467223&partnerID=8YFLogxK
U2 - 10.1007/s10858-018-0176-3
DO - 10.1007/s10858-018-0176-3
M3 - Article
C2 - 29594733
SN - 0925-2738
VL - 70
SP - 219
EP - 228
JO - Journal of Biomolecular NMR
JF - Journal of Biomolecular NMR
IS - 4
ER -