@inproceedings{c560f1e2b4d54996b1739b99a9931ade,
title = "HBLast: An open-source FPGA Library for DNA sequencing acceleration",
abstract = "Biological sequence alignment algorithms work by identifying the degree of similarity between a newly discovered biological sequence with already known sequences. Exponential growth in the database and query sizes make pure softwarebased solutions inefficient in finding a solution within the time constraints. This calls for hardware acceleration-based solutions such as those based on field programmable gate arrays (FPGAs). In this work we present the design and implementation of the popular BLAST algorithm for nucleotide sequence alignment, called HBLast, targeting FPGA-based reconfigurable platforms.",
keywords = "BLAST algorithm, FPGA, Parallel architecture, Sequence alignment",
author = "Marzhan Bekbolat and Sabina Kairatova and Ayan Shymyrbay and Kizheppatt Vipin",
note = "Publisher Copyright: {\textcopyright} 2019 IEEE.; 33rd IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2019 ; Conference date: 20-05-2019 Through 24-05-2019",
year = "2019",
month = may,
doi = "10.1109/IPDPSW.2019.00022",
language = "English (US)",
series = "Proceedings - 2019 IEEE 33rd International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2019",
publisher = "Institute of Electrical and Electronics Engineers Inc.",
pages = "79--82",
booktitle = "Proceedings - 2019 IEEE 33rd International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2019",
address = "United States",
}