LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data.

Yoshinori Fukasawa; Luca Ermini; Hai Wang; Karen Carty; Ming Sin Cheung

doi:10.1534/g3.119.400864

LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data.

Yoshinori Fukasawa, Luca Ermini, Hai Wang, Karen Carty, Ming Sin Cheung

Research output: Contribution to journal › Article › peer-review

95 Scopus citations

Abstract

We propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and LongQC covers all major TGS platforms. LongQC processes and visualizes those statistics automatically and quickly.

Original language	English (US)
Pages (from-to)	g3.400864.2019
Journal	G3 (Bethesda, Md.)
Volume	10
Issue number	4
DOIs	https://doi.org/10.1534/g3.119.400864
State	Published - Feb 12 2020

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10.1534/g3.119.400864

https://repository.kaust.edu.sa/bitstream/10754/661513/1/Articlefile1.pdf

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abstract = "We propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and LongQC covers all major TGS platforms. LongQC processes and visualizes those statistics automatically and quickly.",

author = "Yoshinori Fukasawa and Luca Ermini and Hai Wang and Karen Carty and Cheung, {Ming Sin}",

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AU - Ermini, Luca

AU - Wang, Hai

AU - Carty, Karen

AU - Cheung, Ming Sin

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AB - We propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and LongQC covers all major TGS platforms. LongQC processes and visualizes those statistics automatically and quickly.

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LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data.

Abstract

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Supplemental Material for LongQC: A quality control tool for third generation sequencing long read data, 2020

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LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data.

Abstract

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Supplemental Material for LongQC: A quality control tool for third generation sequencing long read data, 2020

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