TY - JOUR
T1 - Molecular dynamics beyonds the limits: Massive scaling on 72 racks of a BlueGene/P and supercooled glass dynamics of a 1 billion particles system
AU - Allsopp, Nicholas
AU - Ruocco, Giancarlo
AU - Fratalocchi, Andrea
N1 - KAUST Repository Item: Exported on 2020-10-01
PY - 2012/4
Y1 - 2012/4
N2 - We report scaling results on the world's largest supercomputer of our recently developed Billions-Body Molecular Dynamics (BBMD) package, which was especially designed for massively parallel simulations of the short-range atomic dynamics in structural glasses and amorphous materials. The code was able to scale up to 72 racks of an IBM BlueGene/P, with a measured 89% efficiency for a system with 100 billion particles. The code speed, with 0.13. s per iteration in the case of 1 billion particles, paves the way to the study of billion-body structural glasses with a resolution increase of two orders of magnitude with respect to the largest simulation ever reported. We demonstrate the effectiveness of our code by studying the liquid-glass transition of an exceptionally large system made by a binary mixture of 1 billion particles. © 2012.
AB - We report scaling results on the world's largest supercomputer of our recently developed Billions-Body Molecular Dynamics (BBMD) package, which was especially designed for massively parallel simulations of the short-range atomic dynamics in structural glasses and amorphous materials. The code was able to scale up to 72 racks of an IBM BlueGene/P, with a measured 89% efficiency for a system with 100 billion particles. The code speed, with 0.13. s per iteration in the case of 1 billion particles, paves the way to the study of billion-body structural glasses with a resolution increase of two orders of magnitude with respect to the largest simulation ever reported. We demonstrate the effectiveness of our code by studying the liquid-glass transition of an exceptionally large system made by a binary mixture of 1 billion particles. © 2012.
UR - http://hdl.handle.net/10754/562139
UR - http://arxiv.org/abs/arXiv:1105.5613v1
UR - http://www.scopus.com/inward/record.url?scp=84857233461&partnerID=8YFLogxK
U2 - 10.1016/j.jcp.2012.01.019
DO - 10.1016/j.jcp.2012.01.019
M3 - Article
SN - 0021-9991
VL - 231
SP - 3432
EP - 3445
JO - Journal of Computational Physics
JF - Journal of Computational Physics
IS - 8
ER -