Rice Transposable elements: A survey of 73,000 sequence-tagged-connectors

Long Mao; Todd C. Wood; Yeisoo Yu; Muhammad A. Budiman; Jeff Tomkins; Sung Sick Woo; Maciek Sasinowski; Gernot Presting; David Frisch; Steve Goff; Ralph A. Dean; Rod A. Wing

doi:10.1101/gr.10.7.982

Rice Transposable elements: A survey of 73,000 sequence-tagged-connectors

Long Mao, Todd C. Wood, Yeisoo Yu, Muhammad A. Budiman, Jeff Tomkins, Sung Sick Woo, Maciek Sasinowski, Gernot Presting, David Frisch, Steve Goff, Ralph A. Dean, Rod A. Wing

Research output: Contribution to journal › Article › peer-review

182 Scopus citations

Abstract

As part of an international effort to sequence the rice genome, the Clemson University Genomics Institute is developing a sequence-tagged-connector (STC) framework. This framework includes the generation of deep-coverage BAC libraries from O. sativa ssp. japonica c.v. Nipponbare and the sequencing of both ends of the genomic DNA insert of the BAC clones. Here, we report a survey of the transposable elements (TE) in >73,000 STCs. A total of 6848 STCs were found homologous to regions of known TE sequences (E

Original language	English (US)
Journal	Genome Research
Volume	10
Issue number	7
DOIs	https://doi.org/10.1101/gr.10.7.982
State	Published - Aug 17 2000
Externally published	Yes

Access to Document

10.1101/gr.10.7.982

Cite this

@article{690710ecf3814c6ba0644f5ebbf9db65,

title = "Rice Transposable elements: A survey of 73,000 sequence-tagged-connectors",

abstract = "As part of an international effort to sequence the rice genome, the Clemson University Genomics Institute is developing a sequence-tagged-connector (STC) framework. This framework includes the generation of deep-coverage BAC libraries from O. sativa ssp. japonica c.v. Nipponbare and the sequencing of both ends of the genomic DNA insert of the BAC clones. Here, we report a survey of the transposable elements (TE) in >73,000 STCs. A total of 6848 STCs were found homologous to regions of known TE sequences (E",

author = "Long Mao and Wood, {Todd C.} and Yeisoo Yu and Budiman, {Muhammad A.} and Jeff Tomkins and Woo, {Sung Sick} and Maciek Sasinowski and Gernot Presting and David Frisch and Steve Goff and Dean, {Ralph A.} and Wing, {Rod A.}",

note = "Generated from Scopus record by KAUST IRTS on 2019-11-20",

year = "2000",

month = aug,

day = "17",

doi = "10.1101/gr.10.7.982",

language = "English (US)",

volume = "10",

journal = "Genome Research",

issn = "1088-9051",

publisher = "Cold Spring Harbor Laboratory Press",

number = "7",

}

TY - JOUR

T1 - Rice Transposable elements: A survey of 73,000 sequence-tagged-connectors

AU - Mao, Long

AU - Wood, Todd C.

AU - Yu, Yeisoo

AU - Budiman, Muhammad A.

AU - Tomkins, Jeff

AU - Woo, Sung Sick

AU - Sasinowski, Maciek

AU - Presting, Gernot

AU - Frisch, David

AU - Goff, Steve

AU - Dean, Ralph A.

AU - Wing, Rod A.

N1 - Generated from Scopus record by KAUST IRTS on 2019-11-20

PY - 2000/8/17

Y1 - 2000/8/17

N2 - As part of an international effort to sequence the rice genome, the Clemson University Genomics Institute is developing a sequence-tagged-connector (STC) framework. This framework includes the generation of deep-coverage BAC libraries from O. sativa ssp. japonica c.v. Nipponbare and the sequencing of both ends of the genomic DNA insert of the BAC clones. Here, we report a survey of the transposable elements (TE) in >73,000 STCs. A total of 6848 STCs were found homologous to regions of known TE sequences (E

AB - As part of an international effort to sequence the rice genome, the Clemson University Genomics Institute is developing a sequence-tagged-connector (STC) framework. This framework includes the generation of deep-coverage BAC libraries from O. sativa ssp. japonica c.v. Nipponbare and the sequencing of both ends of the genomic DNA insert of the BAC clones. Here, we report a survey of the transposable elements (TE) in >73,000 STCs. A total of 6848 STCs were found homologous to regions of known TE sequences (E

UR - http://www.genome.org/cgi/doi/10.1101/gr.10.7.982

UR - http://www.scopus.com/inward/record.url?scp=0033854088&partnerID=8YFLogxK

U2 - 10.1101/gr.10.7.982

DO - 10.1101/gr.10.7.982

M3 - Article

SN - 1088-9051

VL - 10

JO - Genome Research

JF - Genome Research

IS - 7

ER -

Rice Transposable elements: A survey of 73,000 sequence-tagged-connectors

Abstract

Access to Document

Other files and links

Fingerprint

Cite this