SCANMOT: Searching for similar sequences using a simultaneous scan of multiple sequence motifs

Saikat Chakrabarti; A. Prem Anand; Nitin Bhardwaj; Ganesan Pugalenthi; R. Sowdhamini

doi:10.1093/nar/gki493

SCANMOT: Searching for similar sequences using a simultaneous scan of multiple sequence motifs

Saikat Chakrabarti, A. Prem Anand, Nitin Bhardwaj, Ganesan Pugalenthi, R. Sowdhamini^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

9 Scopus citations

Abstract

Establishment of similarities between proteins is very important for the study of the relationship between sequence, structure and function and for the analysis of evolutionary relationships. Motif-based search methods play a crucial role in establishing the connections between proteins that are particularly useful for distant relationships. This paper reports SCANMOT, a web-based server that searches for similarities between proteins by simultaneous matching of multiple motifs. SCANMOT searches for similar sequences in entire sequence databases using multiple conserved regions and utilizes inter-motif spacing as restraints. The SCANMOT server is available via http://www.ncbs.res.in/ ~faculty/mini/scanmot/scanmot.html.

Original language	English (US)
Pages (from-to)	W274-W276
Journal	NUCLEIC ACIDS RESEARCH
Volume	33
Issue number	SUPPL. 2
DOIs	https://doi.org/10.1093/nar/gki493
State	Published - Jul 2005
Externally published	Yes

ASJC Scopus subject areas

Genetics

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title = "SCANMOT: Searching for similar sequences using a simultaneous scan of multiple sequence motifs",

abstract = "Establishment of similarities between proteins is very important for the study of the relationship between sequence, structure and function and for the analysis of evolutionary relationships. Motif-based search methods play a crucial role in establishing the connections between proteins that are particularly useful for distant relationships. This paper reports SCANMOT, a web-based server that searches for similarities between proteins by simultaneous matching of multiple motifs. SCANMOT searches for similar sequences in entire sequence databases using multiple conserved regions and utilizes inter-motif spacing as restraints. The SCANMOT server is available via http://www.ncbs.res.in/ ~faculty/mini/scanmot/scanmot.html.",

author = "Saikat Chakrabarti and Anand, {A. Prem} and Nitin Bhardwaj and Ganesan Pugalenthi and R. Sowdhamini",

note = "Funding Information: R.S. is a Senior Research Fellow funded by the Wellcome Trust Grant. G.P. is supported by the Wellcome Trust. We would also like to acknowledge the National Centre for Biological Sciences (TIFR) for financial and infrastructural support. The Open Access publication charges for this article were waived by Oxford University Press.",

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AU - Bhardwaj, Nitin

AU - Pugalenthi, Ganesan

AU - Sowdhamini, R.

N1 - Funding Information: R.S. is a Senior Research Fellow funded by the Wellcome Trust Grant. G.P. is supported by the Wellcome Trust. We would also like to acknowledge the National Centre for Biological Sciences (TIFR) for financial and infrastructural support. The Open Access publication charges for this article were waived by Oxford University Press.

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SCANMOT: Searching for similar sequences using a simultaneous scan of multiple sequence motifs

Abstract

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