SeqCode in the golden age of prokaryotic systematics

Diego Javier Jiménez*, Alexandre Soares Rosado*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

1 Scopus citations

Abstract

The SeqCode is a new code of prokaryotic nomenclature that was developed to validate taxon names using genome sequences as the type material. The present article provides an independent view about the SeqCode, highlighting its history, current status, basic features, pros and cons, and use to date. We also discuss important topics to consider for validation of novel prokaryotic taxon names using genomes as the type material. Owing to significant advances in metagenomics and cultivation methods, hundreds of novel prokaryotic species are expected to be discovered in the coming years. This manuscript aims to stimulate and enrich the debate around the use of the SeqCode in the upcoming golden age of prokaryotic taxon discovery and systematics.

Original languageEnglish (US)
Article numberwrae109
JournalISME Journal
Volume18
Issue number1
DOIs
StatePublished - Jan 1 2024

Keywords

  • Candidatus names
  • metagenomics
  • not-yet-cultivated prokaryotes
  • prokaryotic nomenclature
  • prokaryotic taxonomy

ASJC Scopus subject areas

  • Microbiology
  • Ecology, Evolution, Behavior and Systematics

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