The Oryza map alignment project: The golden path to unlocking the genetic potential of wild rice species

Rod A. Wing; Jetty S.S. Ammiraju; Meizhong Luo; Hye Ran Kim; Yeisoo Yu; Dave Kudrna; Jose L. Goicoechea; Wenming Wang; Will Nelson; Kiran Rao; Darshan Brar; Dave J. Mackill; Bin Han; Cari Soderlund; Lincoln Stein; Phillip SanMiguel; Scott Jackson

doi:10.1007/s11103-004-6237-x

The Oryza map alignment project: The golden path to unlocking the genetic potential of wild rice species

Rod A. Wing, Jetty S.S. Ammiraju, Meizhong Luo, Hye Ran Kim, Yeisoo Yu, Dave Kudrna, Jose L. Goicoechea, Wenming Wang, Will Nelson, Kiran Rao, Darshan Brar, Dave J. Mackill, Bin Han, Cari Soderlund, Lincoln Stein, Phillip SanMiguel, Scott Jackson

Research output: Contribution to journal › Article › peer-review

137 Scopus citations

Abstract

The wild species of the genus Oryza offer enormous potential to make a significant impact on agricultural productivity of the cultivated rice species Oryza sativa and Oryza glaberrima. To unlock the genetic potential of wild rice we have initiated a project entitled the 'Oryza Map Alignment Project' (OMAP) with the ultimate goal of constructing and aligning BAC/STC based physical maps of 11 wild and one cultivated rice species to the International Rice Genome Sequencing Project's finished reference genome - O. sativa ssp. japonica c. v. Nipponbare. The 11 wild rice species comprise nine different genome types and include six diploid genomes (AA, BB, CC, EE, FF and GG) and four tetrapliod genomes (BBCC, CCDD, HHKK and HHJJ) with broad geographical distribution and ecological adaptation. In this paper we describe our strategy to construct robust physical maps of all 12 rice species with an emphasis on the AA diploid O. nivara - thought to be the progenitor of modern cultivated rice. © Springer 2005.

Original language	English (US)
Journal	Plant Molecular Biology
Volume	59
Issue number	1
DOIs	https://doi.org/10.1007/s11103-004-6237-x
State	Published - Sep 1 2005
Externally published	Yes

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Wing, R. A., Ammiraju, J. S. S., Luo, M., Kim, H. R., Yu, Y., Kudrna, D., Goicoechea, J. L., Wang, W., Nelson, W., Rao, K., Brar, D., Mackill, D. J., Han, B., Soderlund, C., Stein, L., SanMiguel, P., & Jackson, S. (2005). The Oryza map alignment project: The golden path to unlocking the genetic potential of wild rice species. Plant Molecular Biology, 59(1). https://doi.org/10.1007/s11103-004-6237-x

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abstract = "The wild species of the genus Oryza offer enormous potential to make a significant impact on agricultural productivity of the cultivated rice species Oryza sativa and Oryza glaberrima. To unlock the genetic potential of wild rice we have initiated a project entitled the 'Oryza Map Alignment Project' (OMAP) with the ultimate goal of constructing and aligning BAC/STC based physical maps of 11 wild and one cultivated rice species to the International Rice Genome Sequencing Project's finished reference genome - O. sativa ssp. japonica c. v. Nipponbare. The 11 wild rice species comprise nine different genome types and include six diploid genomes (AA, BB, CC, EE, FF and GG) and four tetrapliod genomes (BBCC, CCDD, HHKK and HHJJ) with broad geographical distribution and ecological adaptation. In this paper we describe our strategy to construct robust physical maps of all 12 rice species with an emphasis on the AA diploid O. nivara - thought to be the progenitor of modern cultivated rice. {\textcopyright} Springer 2005.",

author = "Wing, {Rod A.} and Ammiraju, {Jetty S.S.} and Meizhong Luo and Kim, {Hye Ran} and Yeisoo Yu and Dave Kudrna and Goicoechea, {Jose L.} and Wenming Wang and Will Nelson and Kiran Rao and Darshan Brar and Mackill, {Dave J.} and Bin Han and Cari Soderlund and Lincoln Stein and Phillip SanMiguel and Scott Jackson",

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doi = "10.1007/s11103-004-6237-x",

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Wing, RA, Ammiraju, JSS, Luo, M, Kim, HR, Yu, Y, Kudrna, D, Goicoechea, JL, Wang, W, Nelson, W, Rao, K, Brar, D, Mackill, DJ, Han, B, Soderlund, C, Stein, L, SanMiguel, P & Jackson, S 2005, 'The Oryza map alignment project: The golden path to unlocking the genetic potential of wild rice species', Plant Molecular Biology, vol. 59, no. 1. https://doi.org/10.1007/s11103-004-6237-x

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AU - Ammiraju, Jetty S.S.

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AU - Kim, Hye Ran

AU - Yu, Yeisoo

AU - Kudrna, Dave

AU - Goicoechea, Jose L.

AU - Wang, Wenming

AU - Nelson, Will

AU - Rao, Kiran

AU - Brar, Darshan

AU - Mackill, Dave J.

AU - Han, Bin

AU - Soderlund, Cari

AU - Stein, Lincoln

AU - SanMiguel, Phillip

AU - Jackson, Scott

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N2 - The wild species of the genus Oryza offer enormous potential to make a significant impact on agricultural productivity of the cultivated rice species Oryza sativa and Oryza glaberrima. To unlock the genetic potential of wild rice we have initiated a project entitled the 'Oryza Map Alignment Project' (OMAP) with the ultimate goal of constructing and aligning BAC/STC based physical maps of 11 wild and one cultivated rice species to the International Rice Genome Sequencing Project's finished reference genome - O. sativa ssp. japonica c. v. Nipponbare. The 11 wild rice species comprise nine different genome types and include six diploid genomes (AA, BB, CC, EE, FF and GG) and four tetrapliod genomes (BBCC, CCDD, HHKK and HHJJ) with broad geographical distribution and ecological adaptation. In this paper we describe our strategy to construct robust physical maps of all 12 rice species with an emphasis on the AA diploid O. nivara - thought to be the progenitor of modern cultivated rice. © Springer 2005.

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JO - Plant Molecular Biology

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The Oryza map alignment project: The golden path to unlocking the genetic potential of wild rice species

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